Various errors w/ clean install of OS X

I upgraded a few internal components. Only issue remaining was the battery would not charge. MBP said battery has "Normal Condition". Reset PRAM, SMC, nothing made a difference. It was suggested to attempt a factory reset, which I did. Downloaded, installed, all was fine. I had not yet started moving my backed up data but downloaded 3 things. 1: a logicboard scematic; 2: Google Chrome Browser; and 3: Adobe (I cant recall the version right this second). Chrome had been installed and working. I began to install Adobe and as i started to click on the icon a program appeared: Mac Cleaner or something like that. I could not close it, could not delete it, could not uninstall it, could not even move the window aside to access another open window. On top of it there were 2-3 other pieces of malware/spyware/virus. I could not force quit. I had to force off the power and start up in recovery mode. Ever since I have been unable to reinstall OS X on my MBP. SOS!!!!HELP?!?!?!