Does MAC OS X come with ifixit kit?

No! You must get it from Apple your self (its a licensed product to your system).Its not legal for anyone to pre-install the OS on your drive.

The highest version your system can support is OS-X El Capitan 10.11.x

Here’s the link to the OS installer on Apples support site: How to upgrade to OS X El Capitan Jump down to Step4 click on the Blue URL link labeled Download OS X El Capitan

Hopefully you haven’t taken your current drive out of your system, as you’ll need to use that drive to boot up with the Installer on it. You’ll need an adapter like this one: SATA to USB Adapter Cable so you can connect your new drive to your system.

First format the drive using Disk Utility GUID Journaled file system and then run the installer app.